This is a hotfix release to fix a problem with the way internal functions are accessed when the package is loaded.
App sarCWOSL:
This package version requires R > 4.4!
New application to plot a dose-response curve for luminescence data.
Base function: Luminescence::plot_DoseResponseCurve(). Keyword for
app_RLum(): ‘doseresponsecurve’.
New application to analyse CW-OSL curve data produced by a SUERC
portable OSL reader and produces a combined plot of OSL/IRSL signal
intensities, OSL/IRSL depletion ratios and the IRSL/OSL ratio. Base
function: Luminescence::analyse_portableOSL(). Keyword for
app_RLum(): ‘portableOSL’.
New application to analyse a standard SAR protocol measurements
introduced by Murray and Wintle (2000) with CW-OSL curves. Base
function: Luminescence::analyse_SAR.CWOSL(). Keyword for
app_RLum(): ‘sarCWOSL’.
Made app_RLum() ignore case differences when matching app names.
Made warnings and errors appear as notification in the app, not only in the terminal (#40).
New application to either estimate the number of grains on an aliquot
or to compute the packing density. Base function:
Luminescence::calc_AliquotSize(). Keyword for app_RLum():
‘aliquotsize’.
New application to fit a k-component mixture to a De distribution with
differing known standard errors. Base function:
Luminescence::calc_FiniteMixture(). Keyword for app_RLum():
‘finitemixture’.
New application to calculate the expected sample specific fraction of
saturation based on the model of Huntley (2006), using the approach as
implemented in Kars et al. (2008) or Guralnik et al. (2015). Base
function: Luminescence::calc_Huntley2006(). Keyword for
app_RLum(): ‘huntley2006’.
New application to analyse IRSAR RF measurements on K-feldspar samples
performed using the protocol according to Erfurt et al. (2003) and
beyond. Base function: Luminescence::analyse_IRSAR.RF(). Keyword for
app_RLum(): ‘irsarRF’.
New application to determine weighted non-linear least-squares
estimates of the component parameters of an LM-OSL curve (Bulur 1996)
for a given number of components. Base function:
Luminescence::fit_LMCurve(). Keyword for app_RLum(): ‘lmcurve’.
Added hints on file format and structure expected in each app (#45).
App abanico:
App doserecovery:
given.dose = 0 to disable data normalizationApp histogram:
App radialplot:
App surfaceexposure:
App transformCW:
This package version requires R >= 4.3!
Updated to reflect the changes that have occurred in the
Luminescence and shiny packages.
App cosmicdose:
App doserecovery:
App fastratio:
App histogram:
Non-user visible changes to satisfy CRAN (anchor notes)
This package version requires R > 4.0!
Updated surfaceexposure app now allows considering multiple mu
values when using the global fit functionality.
The filter did not work anymore after changes in 'shiny'; fixed.
The filter selector icons were deprecated, causing a warning in the terminal; fixed.
The app RCarb App did not work anymore after changes in 'shiny';
fixed.
The app scalegamma started with an error message, because one option
for a chosen conversion factor was wrong; fixed.
PREVIEW: New application that scales the gamma dose rate
considering layer-to-layer variations in soil radioactivity. Base
function: Luminescence::scale_GammaDose(). Keyword for app_RLum():
‘scalegamma’.
NOTE: This application will only start if the development version
0.9.x of the R package Luminescence is installed as the function
scale_GammaDose() is still under development.
New application to support the new R package RCarb. Base function
RCarb::model_DoseRate(). Keyword for app_RLum(): ‘RCarb’
Removed and updated deprecated links from the “About”-tab in all applications.
New application that compares the OSL/IRSL stimulation power of
measurements performed on Freiberg Instruments lexsyg devices to check
the stability of the stimulation power (Contributed by Sebastian
Kreutzer). Keyword for app_RLum(): ‘teststimulationpower’.
New application to calculate the fast ratio of CW-OSL curves after
Durcan and Duller (2011). Base function:
Luminescence::calc_FastRatio(). Keyword for app_RLum():
‘fastratio’.
New application to estimate the g-value from a table of Lx/Tx values
with corresponding waiting times since irradiation and to apply a
fading after Huntley & Lamothe (2001). Base functions:
Luminescence::analyse_FadingMeasurement(),
Luminescence::calc_FadingCorr(). Keyword for app_RLum(): ‘fading’.
New application to fit eq. 1 of Sohbati et al. (2012a) or eq. 12 of
Sohbati et al. (2012b) to OSL surface exposure data. Base function:
Luminescence::fit_SurfaceExposure(). Keyword for app_RLum():
‘surfaceexposure’.
Output panel showing the R code to reproduce the plot/calculation is now properly responsive and updates as soon as input widgets change.
Internal: server logic of most applications simplified.
Several minor bugfixes.
Major overhaul of the data input panel for most applications. Uploaded
text files are now imported via ‘data.table::fread()’, which
automatically detects the delimiter and potential headers. Hence, all
widgets related to data import are no longer required and were removed
(#14).
The input data can now be directly manipulated in the newly added
spreadsheet(s) in the data input panels. The spreadsheets also allow
copy and pasting of data, so uploading a file is no longer the only
way to provide user data (#12).
New Dashboard addin added. The dashboard provides access to all available applications in the package and can be accessed either (i) through the addin dropdown menu in the RStudio IDE or (ii) by running ‘app_RLum()’ without any keyword.
Implemented newest shiny feature (v0.14) to bookmark the current app state. All apps now include a bookmark button, which returns a URL query string that can be used to restore the app’s state at any later time.
New application to plot filter combinations along with the optional
net transmission. Base function:
Luminescence::plot_FilterCombinations(). Keyword for app_RLum():
‘filter’. External contribution by Urs Tilmann Wolpert
(Justus-Liebig-University Giessen) and Sebastian Kreutzer (Universite
Bordeaux Montaigne).
New package dependencies: ‘shinydashboard’, ‘rhandsontable’, ‘data.table’, ‘readxl’
transformCW-app:
Internal: R documentation re-written in Markdown using ‘roxygen2 >=6.0.0’
Several minor bugfixes.
New application to transform CW OSL curves (keyword ‘transformCW’) using the functions ‘CW2pHMi’, ‘CW2pLM’, ‘CW2pLMi’ and ‘CW2pPMi’ of the R package ‘Luminescence’.
Removed UI elements that used now deprecated function arguments.
Added new UI elements for arguments added to functions after version 0.4.2 of the ‘Luminescence’ package.
Removed the database feature in the abanico plot application.
Removed dependencies on ‘digest’ and ‘RCurl’.
Removed all ‘Exit’ buttons.
Code output to reproduce the plots is now generated dynamically and should be more reliable.
R Luminescence Package Team now properly mentioned as contributors.
Fixed many typos.